Genomes included in CowPi

Below is a list of all the genomes included in CowPi, including predicted 16S copy numbers, total number of Kegg Orthologs (KO) predicted, and the total number of Genes with KOs annotated.

This is taken from Supplementray Table 4 from the CowPi paper: https://www.frontiersin.org/articles/10.3389/fmicb.2018.01095/full




Genome Name 16S_rRNA_Count Total KO count KO Annotated Genes Present
Acetitomaculum_ruminis_DSM 1 1510 1233
Acidaminococcus_fermentans_pGA-4 1 1372 1169
Acidaminococcus_fermentens_WCC6 1 1352 1155
Acinetobacter_sp._HR7 1 1763 1557
Acinetobacter_sp_DSM 1 1783 1553
Actinobacillus_succinogenes_130Z 6 977 932
Actinomyces_denticolens_PA 1 1372 1232
Actinomyces_nasicola_KPR-1 2 1469 1332
Actinomyces_ruminicola_DSM 1 1536 1312
Actinomyces_ruminicola_KPR-7B 1 1622 1353
Allisonella_histaminiformans_DSM 1 999 898
Alysiella_crassa_DSM_2578 1 1416 1311
Alysiella_filiformis_DSM_16848 1 1328 1255
Anaerovibrio_lipolyticus_DSM_3074 1 1513 1306
Anaerovibrio_lipolyticus_LB2005 1 1480 1282
Anaerovibrio_sp._RM50 1 1450 1261
Arcobacter_butzleri_7h1h 1 803 742
Bacillus_cereus_KPR-7A 1 3138 2313
Bacillus_licheniformis_VTM3R78 1 2743 2308
Bacillus_nealsonii_AAU1 1 2970 2193
Bacillus_sp._MB2021 1 2860 2152
Bacteroidales_bacterium_KHT7 1 1452 1215
Bacteroidales_bacterium_WCE2004 1 1062 935
Bacteroidales_bacterium_WCE2008 1 1063 946
Bacteroides_ovatus_NLAE-zl-C11 1 2192 1517
Bacteroides_ovatus_NLAE-zl-C34 1 2200 1518
Bacteroides_ovatus_NLAE-zl-C500 1 2180 1526
Bacteroides_ovatus_NLAE-zl-C57 1 2200 1519
Bacteroides_sp._AR20 1 2178 1507
Bacteroides_sp._AR29 1 1836 1406
Bacteroides_sp._Ga6A1 1 1448 1205
Bacteroides_sp._Ga6A2 1 1448 1205
Bacteroides_thetaiotaomicron_KPPR-3 1 2212 1526
Bacteroides_thetaiotaomicron_NLAE-zl-C523 1 2213 1529
Bacteroides_thetaiotaomicron_NLAE-zl-C579 1 2218 1529
Bacteroides_thetaiotaomicron_NLAE-zl-G288 1 2271 1557
Bacteroides_vulgatus_NLAE-zl-G202 1 1947 1456
Bacteroides_xylanisolvens_NLAE-zl-C182 1 2102 1509
Bacteroides_xylanisolvens_NLAE-zl-C202 1 2108 1511
Bacteroides_xylanisolvens_NLAE-zl-C29 1 2105 1483
Bacteroides_xylanisolvens_NLAE-zl-C339 1 2105 1511
Bacteroides_xylanisolvens_NLAE-zl-G310 1 2148 1519
Bacteroides_xylanisolvens_NLAE-zl-G339 1 2149 1518
Bacteroides_xylanisolvens_NLAE-zl-G421 1 2144 1518
Basfia_succiniciproducens_DSM 1 1625 1511
Basfia_succiniciproducens_KPR-2 1 1638 1523
Bifidobacterium_adolescentis_DSM 1 1086 973
Bifidobacterium_bifidum_Calf96 1 1048 964
Bifidobacterium_boum_DSM 1 1066 972
Bifidobacterium_breve_RP2 1 1212 1030
Bifidobacterium_longum_AGR2137 1 1187 1041
Bifidobacterium_pseudolongum_AGR2145 1 1048 957
Bifidobacterium_pseudolongum_globosum 1 997 919
Bifidobacterium_ruminantium_DSM 1 1102 1001
Bifidobacterium_sp._AGR2158 1 1053 971
Bifidobacterium_thermophilum_DSM 1 1085 983
Blautia_schinkii_DSM 1 3260 1886
Blautia_sp._SF-50 1 1890 1483
Blautia_wexlerae_AGR2146 1 1757 1376
Bordetella_trematum_HR18 1 2703 2013
Butyrivibrio_fibrisolvens_AB2020 1 2087 1560
Butyrivibrio_fibrisolvens_AR40 1 2202 1598
Butyrivibrio_fibrisolvens_DSM_3071 2 2105 1547
Butyrivibrio_fibrisolvens_FE2007 1 1887 1463
Butyrivibrio_fibrisolvens_MD2001 1 2073 1544
Butyrivibrio_fibrisolvens_ND3005 1 1873 1453
Butyrivibrio_fibrisolvens_WTE3004 1 2102 1567
Butyrivibrio_fibrisolvens_YRB2005 1 2067 1550
Butyrivibrio_hungatei_DSM_14810 1 1690 1354
Butyrivibrio_hungatei_NK4A153 1 1663 1362
Butyrivibrio_hungatei_XBD2006 1 1663 1357
Butyrivibrio_proteoclasticus_B316 6 1919 1446
Butyrivibrio_proteoclasticus_FD2007 1 1805 1390
Butyrivibrio_proteoclasticus_P18 1 1919 1456
Butyrivibrio_proteoclasticus_P6B7 1 1766 1381
Butyrivibrio_sp._AC2005 1 2234 1587
Butyrivibrio_sp._AD3002 1 1958 1474
Butyrivibrio_sp._AE2005 1 1715 1378
Butyrivibrio_sp._AE2015 1 1838 1432
Butyrivibrio_sp._AE2032 8 3560 1366
Butyrivibrio_sp._AE3003 4 1703 1370
Butyrivibrio_sp._AE3004 7 2014 1517
Butyrivibrio_sp._AE3006 1 1941 1451
Butyrivibrio_sp._AE3009 1 1881 1456
Butyrivibrio_sp._FC2001 1 2065 1500
Butyrivibrio_sp._FCS006 1 1879 1456
Butyrivibrio_sp._FCS014 1 1962 1431
Butyrivibrio_sp._INlla14 2 1888 1439
Butyrivibrio_sp._INlla16 1 2069 1521
Butyrivibrio_sp._INlla18 2 1661 1331
Butyrivibrio_sp._INlla21 1 1636 1338
Butyrivibrio_sp._LB2008 1 1770 1428
Butyrivibrio_sp._LC3010 1 2045 1515
Butyrivibrio_sp._M55 1 1729 1394
Butyrivibrio_sp._MB2005 1 1933 1455
Butyrivibrio_sp._MC2013 1 1743 1381
Butyrivibrio_sp._MC2021 1 1936 1483
Butyrivibrio_sp._NC2002 1 1622 1310
Butyrivibrio_sp._NC2007 1 1936 1474
Butyrivibrio_sp._NC3005 1 1805 1405
Butyrivibrio_sp._OB235 1 2047 1519
Butyrivibrio_sp._Su6 1 1834 1432
Butyrivibrio_sp._TB 1 1951 1493
Butyrivibrio_sp._VCB2001 1 1951 1482
Butyrivibrio_sp._VCB2006 1 1836 1429
Butyrivibrio_sp._VCD2006 1 2119 1555
Butyrivibrio_sp._WCD2001 1 1964 1491
Butyrivibrio_sp._WCD3002 1 1931 1452
Butyrivibrio_sp._WCE2006 1 2029 1502
Butyrivibrio_sp._XBB1001 1 1803 1397
Butyrivibrio_sp._XPD2002 1 2047 1508
Butyrivibrio_sp._XPD2006 1 1936 1497
Butyrivibrio_sp._YAB3001 1 2062 1531
Candidatus_Methanomethylophilus_sp._1R26 1 817 649
Cellulomonas_sp._KH9 1 2133 1733
Cellulosilyticum_ruminicola_JCM_14822 1 2102 1615
Cellvibrio_sp._BR 1 2394 1961
Citrobacter_sp._NLAE-zl-C269 1 3400 2967
Clostridiales_bacterium_NK3B98 1 1464 1217
Clostridiales_bacterium_R-7 1 1681 1329
Clostridiales_bacterium_WTE2008 1 1624 1308
Clostridium_aerotolerans_DSM 1 2740 1929
Clostridium_algidicarnis_B3 9 1703 1418
Clostridium_aminophilum_F 1 1596 1340
Clostridium_beijerinckii_AAU1 1 3471 2143
Clostridium_beijerinckii_HUN142 1 3238 2145
Clostridium_butyricum_AGR2140 1 2522 1850
Clostridium_cadaveris_AGR2141 1 1984 1588
Clostridium_cadaveris_NLAE-zl-G419 1 1985 1584
Clostridium_celerecrescens_18A 7 3084 1984
Clostridium_cellobioparum_ATCC_15832 1 3121 1978
Clostridium_clostidiforme_ATCC 1 2923 1940
Clostridium_clostridioforme_AGR2157 1 2611 1825
Clostridium_cochlearium_NLAE-zl-C224 1 1398 1201
Clostridium_glycolicum_KPPR-9 1 2225 1701
Clostridium_innocuum_NLAE-zl-C381 1 2287 1530
Clostridium_innocuum_NLAE-zl-G197 1 2347 1562
Clostridium_intestinale_DSM_6191 1 2709 1937
Clostridium_lundense_DSM 1 2508 1789
Clostridium_mangenotii_LM2 9 1690 1363
Clostridium_paraputrificum_AGR2156 1 1993 1595
Clostridium_polysaccharolyticum_DSM1801 1 1716 1414
Clostridium_sartagoforme_AAU1 1 2222 1709
Clostridium_sp._DSM8431 1 1892 1562
Clostridium_sp._NCR 1 2112 1631
Coriobacteriaceae_bacterium_KH1P3 1 1131 1007
Corynebacterium_vitaeruminis_DSM_20294 5 1593 1442
Corynebacterium_vitaeruminis_Ga6A13 1 1597 1453
Denitrobacterium_detoxificans_DSM 1 1182 1015
Desulfotomaculum_ruminis_DL_DSM_2154 1 2178 1700
Desulfovibrio_desulfuricans_desulfuricans_ATCC_27774 3 1487 1324
Desulfovibrio_desulfuricans_DSM 2 1533 1348
Desulfovibrio_legallii_KHC7 1 1456 1268
Dorea_longicatena_AGR2136 1 1854 1432
Dorea_sp._AGR2135 1 1773 1396
Enterobacter_sp._KPR-6 1 3070 2656
Enterococcus_casseliflavus_NLAE-zl-C414 1 2150 1615
Enterococcus_casseliflavus_NLAE-zl-G268 1 2116 1603
Enterococcus_faecalis_68A 4 1829 1420
Enterococcus_faecalis_VTM1R91 1 1744 1430
Enterococcus_gallinarum_SKF1 5 2064 1554
Enterococcus_mundtii_C2 1 1685 1395
Enterococcus_sp._KPPR-6 1 2615 1794
Erysipelotrichaceae_bacterium_NK3D112 1 1605 1273
Escherichia_coli_PA-3 1 3391 3075
Eubacterium_callanderi_NLAE-zl-G225 1 2217 1612
Eubacterium_cellulosolvens_6 7 1524 1296
Eubacterium_cellulosolvens_LD2006 1 1510 1291
Eubacterium_limosum_SA11 5 2158 1556
Eubacterium_oxidoreducens_DSM 1 1487 1259
Eubacterium_pyruvativorans_i6 1 1174 1054
Eubacterium_pyruvativorans_KHGC13 1 1233 1095
Eubacterium_pyruvativorans_KHPC4 1 1235 1097
Eubacterium_ruminantium_2388 1 1360 1178
Eubacterium_ruminantium_ATCC_17233 1 1355 1177
Eubacterium_ruminantium_FB3002 1 1488 1232
Eubacterium_ruminatium_HUN269 1 1357 1177
Eubacterium_sp._AB3007 1 1216 1067
Eubacterium_uniforme_ATCC_35992 1 1263 1091
Eubacterium_xylanophilum_ATCC_35991 1 1225 1080
Fibrobacter_succinogenes_HM2 1 1398 1183
Fibrobacter_succinogenes_subsp._succinogenes_S85 3 1420 1204
Fusobacterium_necrophorum_HUN048 1 1231 1082
Kandleria_vitulina_DSM 1 1256 1117
Kandleria_vitulina_KH4T7 1 1226 1087
Kandleria_vitulina_MC3001 1 1215 1084
Kandleria_vitulina_S3b 1 1246 1106
Kandleria_vitulina_WCC7 1 1251 1112
Kandleria_vitulina_WCE2011 1 1206 1076
Lachnobacterium_bovis_AE2004 13 1391 1174
Lachnobacterium_bovis_C6A12 1 1325 1166
Lachnobacterium_bovis_DSM 1 1386 1209
Lachnobacterium_bovis_NK4B19 1 1307 1152
Lachnobacterium_bovis_S1b 1 1327 1174
Lachnoclostridium_aminophilum_KH1P1 1 1612 1364
Lachnoclostridium_citroniae_NLAE-zl-G70 1 3516 2069
Lachnoclostridium_clostridioforme_NLAE-zl-C196 1 2734 1851
Lachnoclostridium_clostridioforme_NLAE-zl-G208 1 2735 1854
Lachnoclostridium_contortum_NLAE-zl-C134 1 2773 1834
Lachnoclostridium_lavalense_NLAE-zl-G277 1 3355 2034
Lachnoclostridium_oroticum_NLAE-zl-C242 1 3174 1933
Lachnospira_multipara_ATCC 1 1400 1207
Lachnospira_multipara_D15d 1 1392 1191
Lachnospira_multipara_LB2003 1 1337 1177
Lachnospira_multipara_MC2003 1 1338 1175
Lachnospira_pectinoschiza_M83 1 1409 1217
Lachnospiraceae_bacterium_A10 1 1381 1176
Lachnospiraceae_bacterium_AB2028 1 1559 1244
Lachnospiraceae_bacterium_AC2012 5 1358 1167
Lachnospiraceae_bacterium_AC2014 1 1480 1254
Lachnospiraceae_bacterium_AC2028 1 1412 1173
Lachnospiraceae_bacterium_AC2029 3 1637 1251
Lachnospiraceae_bacterium_AC2031 1 1538 1228
Lachnospiraceae_bacterium_AC3007 1 1443 1206
Lachnospiraceae_bacterium_AD3010 1 1637 1319
Lachnospiraceae_bacterium_C10 1 1453 1233
Lachnospiraceae_bacterium_C6A11 1 1391 1184
Lachnospiraceae_bacterium_C7 1 1442 1240
Lachnospiraceae_bacterium_FD2005 1 1338 1153
Lachnospiraceae_bacterium_FE2018 1 1495 1226
Lachnospiraceae_bacterium_G11 1 1644 1332
Lachnospiraceae_bacterium_G41 1 1272 1105
Lachnospiraceae_bacterium_JC7 1 1796 1425
Lachnospiraceae_bacterium_KH1P17 1 1908 1516
Lachnospiraceae_bacterium_KH1T2 1 1887 1502
Lachnospiraceae_bacterium_KHCPX20 1 1501 1258
Lachnospiraceae_bacterium_LC2019 1 1480 1230
Lachnospiraceae_bacterium_MA2020 1 1803 1466
Lachnospiraceae_bacterium_MC2017 1 1957 1559
Lachnospiraceae_bacterium_MD2004 1 1359 1163
Lachnospiraceae_bacterium_NC2004 1 1447 1209
Lachnospiraceae_bacterium_NC2008 1 1381 1166
Lachnospiraceae_bacterium_ND2006 1 1818 1451
Lachnospiraceae_bacterium_NE2001 1 1618 1266
Lachnospiraceae_bacterium_NK3A20 1 1470 1195
Lachnospiraceae_bacterium_NK4A136 1 1377 1160
Lachnospiraceae_bacterium_NK4A144 1 1913 1524
Lachnospiraceae_bacterium_NK4A179 1 1573 1299
Lachnospiraceae_bacterium_NLAE-zl-G231 1 3681 1993
Lachnospiraceae_bacterium_P6A3 1 1503 1247
Lachnospiraceae_bacterium_P6B14 1 1287 1110
Lachnospiraceae_bacterium_RM5 1 1143 1024
Lachnospiraceae_bacterium_V9D3004 1 1499 1219
Lachnospiraceae_bacterium_XBB1006 1 1334 1141
Lachnospiraceae_bacterium_XBB2008 1 1636 1302
Lachnospiraceae_bacterium_XBD2001 1 1360 1180
Lachnospiraceae_bacterium_XPB1003 1 1519 1242
Lachnospiraceae_bacterium_YSB2008 1 1273 1122
Lachnospiraceae_bacterium_YSD2013 1 1594 1277
Lactobacillus_brevis_AG48 5 1460 1184
Lactobacillus_mucosae_AGR63 11 1201 1054
Lactobacillus_mucosae_KHPC15 1 1171 1037
Lactobacillus_mucosae_KHPX11 1 1169 1036
Lactobacillus_mucosae_WCC8 1 1171 1037
Lactobacillus_plantarum_AG30 7 1913 1431
Lactobacillus_ruminis_ATCC_27782 5 962 888
Lactobacillus_ruminis_DSM 1 1201 1069
Lactobacillus_ruminis_WC1T17 1 1158 1025
Lactococcus_garvieae_M79 1 1250 1103
Lactococcus_lactis_subsp. 12 2948 1282
Lactococcus_lactis_subsp._cremoris_DPC6856 1 1573 1308
Lampropedia_hyalina_DSM_16112 1 1818 1540
Mannheimia_succiniciproducens_MBEL55E 6 1621 1508
Megamonas_sp._Calf98-2 1 1442 1253
Megasphaera_elsdenii_DSM_20460 7 1420 1246
Megasphaera_elsdenii_J1 1 1423 1246
Megasphaera_elsdenii_T81 1 1438 1256
Megasphaera_elsdenii_YE34 1 1419 1252
Methanobacterium_formicicum_BRM9 2 1023 801
Methanobrevibacter_boviskoreani_JH1 1 760 676
Methanobrevibacter_gottschalkii_DSM 2 671 551
Methanobrevibacter_millerae_DSM 1 747 564
Methanobrevibacter_millerae_SM9 2 881 724
Methanobrevibacter_olleyae_DSM 1 695 568
Methanobrevibacter_ruminantium_M1 2 842 714
Methanobrevibacter_sp._AbM4 3 760 667
Methanobrevibacter_wolinii_SH 1 685 563
Methanobrevibacter_YLM1 2 753 674
Methanogenic_archaeon_ISO4-G1 1 687 565
Methanogenic_archaeon_ISO4-H5 2 768 634
Methanomassiliicoccales_archaeon_RumEn_M1 1 974 804
Methanomassiliicoccales_archaeon_RumEn_M2 1 635 567
Methanomicrobium_mobile_DSM 1 637 526
Methanosarcina_barkeri_CM1 3 1480 1045
Methanosarcina_sp._DSM 1 962 670
Micrococcineae_bacterium_KH10 1 1370 1248
Micrococcus_luteus_VTM4R57 1 1421 1300
Mitsuokella_jalaludinii_DSM 1 1454 1315
Morganella_morganii_NLAE-zl-C84 1 2521 2222
Olsenella_sp._KH2P3 1 1286 1123
Olsenella_sp._KH3B4 1 1324 1163
Olsenella_umbonata_DSM 1 1256 1104
Olsenella_umbonata_KHGC19 1 1164 1029
Olsenella_umbonata_WCP15 1 1131 1005
Oribacterium_sp._FC2011 1 1796 1391
Oribacterium_sp._KHPX15 1 1754 1390
Oribacterium_sp._NK2B42 1 1633 1291
Oribacterium_sp._P6A1 1 1766 1397
Oribacterium_sp._WCC10 1 1737 1394
Oscillibacter_ruminantium_GH1 1 1665 1375
Oscillibacter_sp._PC13 1 1586 1267
Oxobacter_pfennigii_DSM_3222 1 2369 1723
Pediococcus_acidilactici_AGR20 5 1225 1045
Peptostreptococcaceae_bacterium_pGA-8 2 1016 921
Peptostreptococcaceae_bacterium_VA2 22 1955 1463
Peptostreptococcus_anaerobius_C 1 1197 1046
Peptostreptococcus_russellii_Calf135 1 1224 1082
Peptostreptococcus_sp._D1 1 1218 1050
Porphyromonadaceae_bacterium_KH3CP3RA 1 1887 1441
Porphyromonadaceae_bacterium_KH3R12 1 1727 1358
Porphyromonadaceae_bacterium_KHP3R9 2 1432 1199
Porphyromonadaceae_bacterium_NLAE-zl-C104 1 1636 1314
Porphyromonas_levii_DSM_23370 1 1037 927
Prauserella_rugosa_DSM_43194 3 3008 2224
Prevoltella_albensis_DSM_11370 1 1201 1066
Prevotella_brevis_ATCC_19188 1 1356 1153
Prevotella_brevis_P6B11 1 1319 1138
Prevotella_bryantii_C21a 1 1374 1152
Prevotella_bryantii_DSM_11371 1 1435 1193
Prevotella_bryantii_FB3001 1 1394 1153
Prevotella_bryantii_KHPX14 1 1382 1161
Prevotella_ruminicola_AR32 1 1432 1207
Prevotella_ruminicola_ATCC_19189 1 1476 1222
Prevotella_ruminicola_BPI-162 1 1487 1209
Prevotella_ruminicola_BPI-34 1 1512 1234
Prevotella_ruminicola_D31d 1 1584 1260
Prevotella_ruminicola_Ga6B6 1 1509 1231
Prevotella_ruminicola_KHT3 1 1583 1250
Prevotella_sp._AGR2160 1 1243 1083
Prevotella_sp._BP1-145 1 1388 1154
Prevotella_sp._BP1-148 1 1407 1179
Prevotella_sp._FD3004 1 1395 1186
Prevotella_sp._HUN102 6 1150 997
Prevotella_sp._KH1P2 1 1323 1133
Prevotella_sp._KH2C16 1 1282 1079
Prevotella_sp._KHP1 1 1470 1226
Prevotella_sp._KHP7 1 1446 1207
Prevotella_sp._LC2012 1 1345 1154
Prevotella_sp._MA2016 1 1488 1233
Prevotella_sp._NE3005 1 1557 1257
Prevotella_sp._P6B1 1 1526 1231
Prevotella_sp._P6B4 1 1479 1207
Prevotella_sp._RM4 1 1481 1232
Prevotella_sp._TC2-24 1 1337 1148
Prevotella_sp._TC2-28 1 1419 1183
Prevotella_sp._TF2-5 1 1399 1166
Prevotellaceae_bacterium_HUN156 1 1210 1059
Prevotellaceae_bacterium_KH2P17 1 1330 1137
Prevotellaceae_bacterium_MN60 1 1215 1054
Propionibacteriaceae_bacterium_P6A17 1 1516 1359
Propionibacterium_acnes_NLAE-zl-G260 1 1466 1325
Propionibacterium_sp._MB3007 1 1464 1325
Proteiniclasticum_ruminis_DSM 1 1761 1447
Proteus_mirabilis_NLAE-zl-C285 1 2382 2151
Proteus_mirabilis_NLAE-zl-G534 1 2443 2187
Pseudobutyrivibrio_ruminis_ACV-9 1 1557 1305
Pseudobutyrivibrio_ruminis_AD2017 1 1523 1283
Pseudobutyrivibrio_ruminis_CF1b 1 1670 1396
Pseudobutyrivibrio_ruminis_DSM 1 1608 1340
Pseudobutyrivibrio_ruminis_HUN009 1 1511 1268
Pseudobutyrivibrio_sp._49 1 1719 1408
Pseudobutyrivibrio_sp._ACV-2 1 1844 1485
Pseudobutyrivibrio_sp._C4 1 1562 1308
Pseudobutyrivibrio_sp._JW11 1 1621 1351
Pseudobutyrivibrio_sp._LB2011 1 1563 1297
Pseudobutyrivibrio_sp._MD2005 1 1565 1321
Pseudobutyrivibrio_sp._NOR37 1 1618 1355
Pseudobutyrivibrio_sp._OR37 1 1677 1375
Pseudobutyrivibrio_sp._UC1225 1 1720 1401
Pseudobutyrivibrio_sp._YE44 1 1620 1338
Pseudobutyrivibrio_sp_AR14 1 1621 1359
Pseudobutyrivibrio_xylanivorans_DSM 1 1683 1402
Pseudobutyrivibrio_xylanivorans_DSM_14809 1 1721 1396
Pseudochrobactrum_sp._AO18b 1 2016 1640
Ruaniaceae_bacterium_KH17 1 1520 1339
Ruminobacter_amylophilus_DSM 1 1295 1185
Ruminobacter_sp._RM87 1 1315 1195
Ruminococcaceae_bacterium_AB4001 1 1438 1124
Ruminococcaceae_bacterium_AE2021 2 1390 1156
Ruminococcaceae_bacterium_D5 1 1405 1163
Ruminococcaceae_bacterium_FB2012 2 1539 1225
Ruminococcaceae_bacterium_KH2T8 1 1328 1108
Ruminococcaceae_bacterium_KHP2 1 1370 1140
Ruminococcaceae_bacterium_P7 1 1342 1132
Ruminococcaceae_bacterium_R-25 1 1365 1155
Ruminococcaceae_bacterium_YAD3003 1 1239 1055
Ruminococcaceae_bacterium_YRB3002 1 1261 1067
Ruminococcus_albus_7 4 1697 1336
Ruminococcus_albus_8 1 1144 941
Ruminococcus_albus_AD2013 4 1659 1312
Ruminococcus_albus_AR67 1 1691 1351
Ruminococcus_albus_DSM_20455 1 1672 1334
Ruminococcus_albus_KH2T6 1 1578 1280
Ruminococcus_albus_SY3 1 1723 1290
Ruminococcus_bromii_YE282 1 1195 1037
Ruminococcus_flavefaciens_007c 1 1586 1283
Ruminococcus_flavefaciens_17 1 1414 1175
Ruminococcus_flavefaciens_AE3010 4 1589 1253
Ruminococcus_flavefaciens_ATCC_19208 1 844 736
Ruminococcus_flavefaciens_FD-1 3 1809 1352
Ruminococcus_flavefaciens_MA2007 1 1516 1210
Ruminococcus_flavefaciens_MC2020 1 1396 1158
Ruminococcus_flavefaciens_ND2009 1 1547 1276
Ruminococcus_flavefaciens_SAb67 1 1559 1277
Ruminococcus_flavefaciens_XPD3002 1 1500 1221
Ruminococcus_flavefaciens_Y1 1 1600 1268
Ruminococcus_flavefaciens_YAD2003 1 1585 1252
Ruminococcus_flavefaciens_YL228 1 1522 1211
Ruminococcus_flavefaciens_YRD2003 2 1431 1173
Ruminococcus_gnavus_AGR2154 5 1883 1448
Ruminococcus_sp._FC2018 1 1180 1037
Ruminococcus_sp._NK3A76 3 1453 1200
Ruminococcus_sp._YE71 1 1740 1356
Ruminococcus_sp._YE78 1 1760 1364
Sarcina_sp._DSM 1 1591 1316
Schwartzia_succinivorans_DSM_10502 1 1461 1279
Selenomonas_bovis_8-14-1 1 1461 1307
Selenomonas_bovis_DSM_23594 1 1521 1340
Selenomonas_ruminantium_AB3002 7 1794 1475
Selenomonas_ruminantium_AC2024 7 1627 1391
Selenomonas_ruminantium_C3 1 1606 1395
Selenomonas_ruminantium_GACV-9 1 1683 1447
Selenomonas_ruminantium_HD4 1 1767 1514
Selenomonas_ruminantium_KH1T6 1 1852 1531
Selenomonas_ruminantium_L14 1 1775 1494
Selenomonas_ruminantium_lactilytica_TAM6421 7 1847 1537
Selenomonas_ruminantium_subsp. 1 1705 1444
Selenomonas_ruminantium_WCT3 1 1667 1445
Selenomonas_ruminantium_Z108 1 1776 1510
Selenomonas_ruminatium_S137 1 1832 1532
Selenomonas_sp._AE3005 1 1558 1357
Selenomonas_sp._FC4001 1 1636 1416
Selenomonas_sp._ND2010 1 1663 1428
Sharpea_azabuensis_DSM-18934 1 1424 1209
Sharpea_azabuensis_DSM-20406 1 1412 1211
Sharpea_azabuensis_KH1P5 1 1415 1206
Sharpea_azabuensis_KH2P10 1 1416 1205
Shigella_sonnei_NLAE-zl-G496 1 3368 3059
Slackia_heliotrinireducens_DSM_20476 2 1483 1207
Staphylococcus_epidermidis_AG42 1 1597 1430
Staphylococcus_epidermidis_NLAE-zl-G239 1 1548 1413
Streptococcus_bovis_2B 1 1237 1123
Streptococcus_bovis_AG46 7 1281 1141
Streptococcus_bovis_ATCC_33317 1 1228 1114
Streptococcus_bovis_B315 1 1204 1108
Streptococcus_bovis_C277 1 1217 1117
Streptococcus_bovis_ES1 1 1218 1118
Streptococcus_bovis_JB1 1 1224 1118
Streptococcus_bovis_SN033 1 1212 1113
Streptococcus_equinus_AR3 1 1250 1136
Streptococcus_equinus_GA-1 1 1210 1112
Streptococcus_equinus_H24 1 1236 1128
Streptococcus_equinus_HC5 1 1239 1127
Streptococcus_equinus_MPR1 1 1233 1130
Streptococcus_equinus_MPR2 1 1234 1129
Streptococcus_equinus_MPR4 1 1255 1138
Streptococcus_equinus_pGA-7 1 1214 1117
Streptococcus_equinus_pR-5 1 1217 1111
Streptococcus_equinus_Sb04 1 1196 1089
Streptococcus_equinus_Sb05 1 1246 1131
Streptococcus_equinus_Sb09 1 1287 1158
Streptococcus_equinus_Sb10 1 1228 1112
Streptococcus_equinus_Sb13 1 1218 1112
Streptococcus_equinus_Sb17 1 1236 1126
Streptococcus_equinus_Sb18 1 1249 1139
Streptococcus_equinus_Sb20 1 1233 1124
Streptococcus_equinus_SI 1 1275 1149
Streptococcus_equinus_Ye01 1 1262 1144
Streptococcus_gallolyticus_LMG 1 1425 1250
Streptococcus_gallolyticus_VTM1R27 1 1355 1209
Streptococcus_gallolyticus_VTM1R29 1 1354 1212
Streptococcus_gallolyticus_VTM2R47 1 1326 1190
Streptococcus_gallolyticus_VTM3R24 1 1358 1220
Streptococcus_gallolyticus_VTM3R42 1 1358 1220
Streptococcus_henryi_A-4 1 1333 1183
Streptococcus_sp._45 1 1200 1098
Streptococcus_sp._NLAE-zl-C503 1 1158 1064
Succiniclasticum_ruminis_DSM 1 1314 1154
Succiniclasticum_ruminis_DSM11005 1 1379 1177
Succinimonas_amylolytica_DSM_2873 5 1451 1265
Succinivibrio_dextrinosolvens_22B 1 1520 1331
Succinivibrio_dextrinosolvens_ACV-10 1 1487 1311
Succinivibrio_dextrinosolvens_DSM_3072 1 1450 1293
Succinivibrio_dextrinosolvens_H5 1 1454 1289
Synergistes_jonesii_78-1 3 1501 1192
Synergistes_Syn_Fa1 1 1895 1383
Thermoplasmatales_archaeon_BRNA1 1 673 581
Treponema_bryantii_B25 1 1555 1259
Treponema_bryantii_NK4A124 1 1421 1165
Treponema_bryantii_XBD1002 1 1431 1167
Treponema_saccharophilum_PB,_DSM_2985 1 1430 1200
Treponema_sp._C6A8 1 1347 1137
Treponema_sp._JC4 1 1391 1163
Wolinella_succinogenes_DSM_1740 3 1353 1199